# Paratope-footprint radius (Å): 10.0 # Temperature of immunization (K): 312.35 # Temperature of immunoassay (K): 293.15 # # Output headers for epitope predictions: # A: Antigen-chain list serial no. # NAA: N-terminal sequence position # CAA: C-terminal sequence position # L: Location: N-/C-/Di-terminal or Internal # Q: Net charge (based on formal-charge counts) # N: Number of AAs in sequence (AA count) # M: Upper bound on N (sequence-dependent) # SPHER: Spherical-volume compaction free-energy penalty (kT) # CIRCUL: Circular-surface collapse free-energy penalty (kT) # KD_IMMUN: Dissociation constant for immunization (mol/L) # KD_ASSAY: Dissociation constant for immunoassay (mol/L) # SEQUENCE: Epitope sequence # ANTIGEN: Antigen sequence # # Predicted most immunodominant epitope/s in query antigen/s: # A NAA CAA L Q N M SPHER CIRCUL KD_IMMUN KD_ASSAY SEQUENCE/ANTIGEN 1 15 24 C -3 10 11 1.723 2.380 2.40e-09 5.01e-10 ESPEPLSQQW/VPASPPASLLPPASESPEPLSQQW # Candidate epitope/s in query antigen/s: # A NAA CAA L Q N M SPHER CIRCUL KD_IMMUN KD_ASSAY SEQUENCE 1 1 3 N 1 3 13 0.000 0.000 3.77e-03 2.61e-03 VPA 1 1 4 N 1 4 13 0.000 0.000 9.37e-04 5.93e-04 VPAS 1 1 5 N 1 5 13 0.000 0.000 4.61e-04 2.79e-04 VPASP 1 1 6 N 1 6 13 0.000 0.000 2.58e-04 1.50e-04 VPASPP 1 1 7 N 1 7 13 1.183 0.134 8.14e-04 4.69e-04 VPASPPA 1 1 8 N 1 8 13 1.298 0.421 3.45e-04 1.83e-04 VPASPPAS 1 1 9 N 1 9 13 1.394 0.891 4.34e-04 2.25e-04 VPASPPASL 1 1 10 N 1 10 12 1.512 1.898 8.40e-04 4.23e-04 VPASPPASLL 1 1 11 N 1 11 12 1.739 3.150 1.82e-03 8.72e-04 VPASPPASLLP 1 1 12 N 1 12 12 2.090 5.096 1.01e-02 4.67e-03 VPASPPASLLPP 1 1 13 N 1 13 13 2.440 6.031 3.09e-02 1.41e-02 VPASPPASLLPPA 1 2 4 I 0 3 14 0.000 0.000 1.45e-02 1.10e-02 PAS 1 2 5 I 0 4 14 0.000 0.000 7.13e-03 5.16e-03 PASP 1 2 6 I 0 5 13 0.000 0.000 3.99e-03 2.78e-03 PASPP 1 2 7 I 0 6 14 0.000 0.000 3.38e-03 2.33e-03 PASPPA 1 2 8 I 0 7 14 0.712 0.118 2.19e-03 1.39e-03 PASPPAS 1 2 9 I 0 8 13 0.859 0.421 2.46e-03 1.52e-03 PASPPASL 1 2 10 I 0 9 13 1.015 0.891 2.89e-03 1.74e-03 PASPPASLL 1 2 11 I 0 10 13 1.263 1.584 3.64e-03 2.09e-03 PASPPASLLP 1 2 12 I 0 11 13 1.621 2.565 7.79e-03 4.31e-03 PASPPASLLPP 1 2 13 I 0 12 13 1.975 3.951 3.75e-02 2.05e-02 PASPPASLLPPA 1 2 14 I 0 13 13 2.107 6.031 9.68e-02 4.88e-02 PASPPASLLPPAS 1 3 5 I 0 3 14 0.000 0.000 1.27e-02 9.57e-03 ASP 1 3 6 I 0 4 14 0.000 0.000 7.13e-03 5.16e-03 ASPP 1 3 7 I 0 5 14 0.000 0.000 6.03e-03 4.32e-03 ASPPA 1 3 8 I 0 6 14 0.000 0.000 1.71e-03 1.12e-03 ASPPAS 1 3 9 I 0 7 13 0.655 0.134 2.68e-03 1.73e-03 ASPPASL 1 3 10 I 0 8 13 0.814 0.421 2.64e-03 1.65e-03 ASPPASLL 1 3 11 I 0 9 13 1.080 0.891 2.71e-03 1.62e-03 ASPPASLLP 1 3 12 I 0 10 13 1.465 1.584 4.46e-03 2.56e-03 ASPPASLLPP 1 3 13 I 0 11 13 1.844 2.565 1.47e-02 8.35e-03 ASPPASLLPPA 1 3 14 I 0 12 13 1.975 3.951 1.89e-02 9.91e-03 ASPPASLLPPAS 1 3 15 I -1 13 13 2.183 6.031 5.94e-03 2.48e-03 ASPPASLLPPASE 1 4 6 I 0 3 13 0.000 0.000 8.43e-03 6.17e-03 SPP 1 4 7 I 0 4 14 0.000 0.000 7.13e-03 5.16e-03 SPPA 1 4 8 I 0 5 14 0.000 0.000 2.02e-03 1.34e-03 SPPAS 1 4 9 I 0 6 13 0.000 0.000 1.44e-03 9.40e-04 SPPASL 1 4 10 I 0 7 12 0.523 0.154 1.79e-03 1.13e-03 SPPASLL 1 4 11 I 0 8 12 0.814 0.491 1.65e-03 9.93e-04 SPPASLLP 1 4 12 I 0 9 12 1.226 1.050 2.43e-03 1.41e-03 SPPASLLPP 1 4 13 I 0 10 13 1.627 1.584 5.25e-03 3.01e-03 SPPASLLPPA 1 4 14 I 0 11 13 1.764 2.565 4.54e-03 2.40e-03 SPPASLLPPAS 1 4 15 I -1 12 13 1.979 3.951 7.15e-04 3.02e-04 SPPASLLPPASE 1 4 16 I -1 13 13 2.135 6.031 1.66e-03 6.41e-04 SPPASLLPPASES 1 5 7 I 0 3 13 0.000 0.000 2.87e-02 2.27e-02 PPA 1 5 8 I 0 4 14 0.000 0.000 8.11e-03 5.92e-03 PPAS 1 5 9 I 0 5 13 0.000 0.000 5.80e-03 4.14e-03 PPASL 1 5 10 I 0 6 12 0.000 0.000 3.65e-03 2.53e-03 PPASLL 1 5 11 I 0 7 12 0.386 0.154 3.08e-03 2.04e-03 PPASLLP 1 5 12 I 0 8 12 0.814 0.491 3.71e-03 2.36e-03 PPASLLPP 1 5 13 I 0 9 12 1.226 1.050 8.28e-03 5.21e-03 PPASLLPPA 1 5 14 I 0 10 13 1.393 1.584 4.72e-03 2.74e-03 PPASLLPPAS 1 5 15 I -1 11 12 1.638 3.150 9.19e-04 4.25e-04 PPASLLPPASE 1 5 16 I -1 12 13 1.812 3.951 6.05e-04 2.55e-04 PPASLLPPASES 1 5 17 I -1 13 13 2.019 6.031 3.34e-03 1.36e-03 PPASLLPPASESP 1 6 8 I 0 3 14 0.000 0.000 1.65e-02 1.26e-02 PAS 1 6 9 I 0 4 13 0.000 0.000 1.18e-02 8.82e-03 PASL 1 6 10 I 0 5 12 0.000 0.000 7.41e-03 5.38e-03 PASLL 1 6 11 I 0 6 12 0.000 0.000 3.65e-03 2.53e-03 PASLLP 1 6 12 I 0 7 12 0.386 0.154 3.51e-03 2.34e-03 PASLLPP 1 6 13 I 0 8 12 0.814 0.491 6.37e-03 4.20e-03 PASLLPPA 1 6 14 I 0 9 13 1.015 0.891 3.29e-03 1.99e-03 PASLLPPAS 1 6 15 I -1 10 12 1.293 1.898 3.78e-04 1.83e-04 PASLLPPASE 1 6 16 I -1 11 13 1.485 2.565 2.22e-04 9.81e-05 PASLLPPASES 1 6 17 I -1 12 13 1.705 3.951 6.19e-04 2.63e-04 PASLLPPASESP 1 7 9 I 0 3 13 0.000 0.000 2.11e-02 1.64e-02 ASL 1 7 10 I 0 4 12 0.000 0.000 1.32e-02 9.98e-03 ASLL 1 7 11 I 0 5 12 0.000 0.000 6.52e-03 4.69e-03 ASLLP 1 7 12 I 0 6 12 0.000 0.000 3.65e-03 2.53e-03 ASLLPP 1 7 13 I 0 7 12 0.602 0.154 6.57e-03 4.50e-03 ASLLPPA 1 7 14 I 0 8 13 0.814 0.421 3.00e-03 1.89e-03 ASLLPPAS 1 7 15 I -1 9 12 1.101 1.050 2.39e-04 1.20e-04 ASLLPPASE 1 7 16 I -1 10 13 1.306 1.584 1.24e-04 5.70e-05 ASLLPPASES 1 7 17 I -1 11 13 1.538 2.565 2.34e-04 1.03e-04 ASLLPPASESP 1 7 18 I -2 12 12 1.986 5.096 1.29e-04 4.50e-05 ASLLPPASESPE 1 8 10 I 0 3 11 0.000 0.000 1.57e-02 1.19e-02 SLL 1 8 11 I 0 4 11 0.000 0.000 7.71e-03 5.60e-03 SLLP 1 8 12 I 0 5 12 0.000 0.000 4.31e-03 3.02e-03 SLLPP 1 8 13 I 0 6 12 0.000 0.000 3.65e-03 2.53e-03 SLLPPA 1 8 14 I 0 7 12 0.655 0.154 2.32e-03 1.48e-03 SLLPPAS 1 8 15 I -1 8 12 0.939 0.491 1.37e-04 6.97e-05 SLLPPASE 1 8 16 I -1 9 12 1.153 1.050 7.39e-05 3.43e-05 SLLPPASES 1 8 17 I -1 10 12 1.399 1.898 1.23e-04 5.52e-05 SLLPPASESP 1 8 18 I -2 11 12 1.871 3.150 1.94e-05 6.85e-06 SLLPPASESPE 1 8 19 I -2 12 12 2.094 5.096 9.49e-05 3.23e-05 SLLPPASESPEP 1 9 11 I 0 3 11 0.000 0.000 2.73e-02 2.15e-02 LLP 1 9 12 I 0 4 11 0.000 0.000 1.53e-02 1.16e-02 LLPP 1 9 13 I 0 5 12 0.000 0.000 1.29e-02 9.71e-03 LLPPA 1 9 14 I 0 6 12 0.000 0.000 3.65e-03 2.53e-03 LLPPAS 1 9 15 I -1 7 12 0.778 0.154 2.95e-04 1.63e-04 LLPPASE 1 9 16 I -1 8 12 1.000 0.491 1.28e-04 6.46e-05 LLPPASES 1 9 17 I -1 9 12 1.260 1.050 1.63e-04 7.91e-05 LLPPASESP 1 9 18 I -2 10 12 1.763 1.898 1.76e-05 6.75e-06 LLPPASESPE 1 9 19 I -2 11 12 1.995 3.150 4.34e-05 1.61e-05 LLPPASESPEP 1 9 20 I -2 12 12 2.359 5.096 3.13e-04 1.13e-04 LLPPASESPEPL 1 10 12 I 0 3 11 0.000 0.000 2.13e-02 1.66e-02 LPP 1 10 13 I 0 4 12 0.000 0.000 1.80e-02 1.39e-02 LPPA 1 10 14 I 0 5 13 0.000 0.000 5.10e-03 3.61e-03 LPPAS 1 10 15 I -1 6 12 0.000 0.000 1.62e-04 9.16e-05 LPPASE 1 10 16 I -1 7 13 0.716 0.134 9.43e-05 4.86e-05 LPPASES 1 10 17 I -1 8 13 1.000 0.421 9.35e-05 4.64e-05 LPPASESP 1 10 18 I -2 9 12 1.529 1.050 8.33e-06 3.27e-06 LPPASESPE 1 10 19 I -2 10 12 1.774 1.898 1.39e-05 5.26e-06 LPPASESPEP 1 10 20 I -2 11 12 2.156 3.150 5.10e-05 1.89e-05 LPPASESPEPL 1 10 21 I -2 12 12 2.232 5.096 1.09e-04 3.71e-05 LPPASESPEPLS 1 11 13 I 0 3 13 0.000 0.000 2.87e-02 2.27e-02 PPA 1 11 14 I 0 4 14 0.000 0.000 8.11e-03 5.92e-03 PPAS 1 11 15 I -1 5 13 0.000 0.000 2.58e-04 1.50e-04 PPASE 1 11 16 I -1 6 13 0.000 0.000 6.42e-05 3.41e-05 PPASES 1 11 17 I -1 7 13 0.573 0.134 7.28e-05 3.72e-05 PPASESP 1 11 18 I -2 8 13 1.119 0.421 4.69e-06 1.90e-06 PPASESPE 1 11 19 I -2 9 13 1.389 0.891 5.50e-06 2.14e-06 PPASESPEP 1 11 20 I -2 10 12 1.774 1.898 1.58e-05 6.03e-06 PPASESPEPL 1 11 21 I -2 11 13 1.881 2.565 9.70e-06 3.40e-06 PPASESPEPLS 1 11 22 I -2 12 12 1.995 5.096 1.11e-05 3.29e-06 PPASESPEPLSQ 1 12 14 I 0 3 14 0.000 0.000 1.65e-02 1.26e-02 PAS 1 12 15 I -1 4 13 0.000 0.000 5.24e-04 3.20e-04 PASE 1 12 16 I -1 5 13 0.000 0.000 1.30e-04 7.26e-05 PASES 1 12 17 I -1 6 13 0.000 0.000 7.30e-05 3.91e-05 PASESP 1 12 18 I -2 7 13 0.699 0.134 4.69e-06 1.99e-06 PASESPE 1 12 19 I -2 8 13 0.996 0.421 4.71e-06 1.92e-06 PASESPEP 1 12 20 I -2 9 12 1.389 1.050 9.37e-06 3.74e-06 PASESPEPL 1 12 21 I -2 10 13 1.527 1.584 5.19e-06 1.91e-06 PASESPEPLS 1 12 22 I -2 11 12 1.665 3.150 2.31e-06 7.20e-07 PASESPEPLSQ 1 12 23 I -2 12 12 1.870 5.096 1.61e-06 4.25e-07 PASESPEPLSQQ 1 13 15 I -1 3 13 0.000 0.000 9.37e-04 5.93e-04 ASE 1 13 16 I -1 4 14 0.000 0.000 2.33e-04 1.35e-04 ASES 1 13 17 I -1 5 13 0.000 0.000 1.30e-04 7.26e-05 ASESP 1 13 18 I -2 6 13 0.000 0.000 3.65e-06 1.61e-06 ASESPE 1 13 19 I -2 7 13 0.774 0.134 5.06e-06 2.15e-06 ASESPEP 1 13 20 I -2 8 12 1.206 0.491 7.97e-06 3.30e-06 ASESPEPL 1 13 21 I -2 9 13 1.347 0.891 3.87e-06 1.48e-06 ASESPEPLS 1 13 22 I -2 10 12 1.491 1.898 9.90e-07 3.21e-07 ASESPEPLSQ 1 13 23 I -2 11 12 1.707 3.150 3.48e-07 9.57e-08 ASESPEPLSQQ 1 13 24 C -3 12 12 2.028 5.096 1.18e-08 2.24e-09 ASESPEPLSQQW 1 14 16 I -1 3 13 0.000 0.000 2.75e-04 1.61e-04 SES 1 14 17 I -1 4 13 0.000 0.000 1.54e-04 8.67e-05 SESP 1 14 18 I -2 5 12 0.000 0.000 4.31e-06 1.92e-06 SESPE 1 14 19 I -2 6 12 0.000 0.000 2.41e-06 1.03e-06 SESPEP 1 14 20 I -2 7 12 1.087 0.154 5.97e-06 2.50e-06 SESPEPL 1 14 21 I -2 8 12 1.206 0.491 2.66e-06 1.03e-06 SESPEPLS 1 14 22 I -2 9 12 1.347 1.050 4.34e-07 1.42e-07 SESPEPLSQ 1 14 23 I -2 10 12 1.574 1.898 1.03e-07 2.86e-08 SESPEPLSQQ 1 14 24 C -3 11 11 1.903 4.171 4.88e-09 9.37e-10 SESPEPLSQQW 1 15 17 I -1 3 12 0.000 0.000 5.45e-04 3.33e-04 ESP 1 15 18 I -2 4 12 0.000 0.000 1.52e-05 7.37e-06 ESPE 1 15 19 I -2 5 12 0.000 0.000 8.54e-06 3.97e-06 ESPEP 1 15 20 I -2 6 12 0.000 0.000 6.10e-06 2.78e-06 ESPEPL 1 15 21 I -2 7 12 0.999 0.154 5.47e-06 2.29e-06 ESPEPLS 1 15 22 I -2 8 12 1.140 0.491 7.14e-07 2.54e-07 ESPEPLSQ 1 15 23 I -2 9 12 1.382 1.050 1.29e-07 3.89e-08 ESPEPLSQQ 1 15 24 C -3 10 11 1.723 2.380 2.40e-09 5.01e-10 ESPEPLSQQW 1 16 18 I -1 3 12 0.000 0.000 4.79e-04 2.90e-04 SPE 1 16 19 I -1 4 12 0.000 0.000 2.68e-04 1.57e-04 SPEP 1 16 20 I -1 5 12 0.000 0.000 1.92e-04 1.10e-04 SPEPL 1 16 21 I -1 6 12 0.000 0.000 5.43e-05 2.85e-05 SPEPLS 1 16 22 I -1 7 12 0.739 0.154 1.07e-05 4.78e-06 SPEPLSQ 1 16 23 I -1 8 12 1.003 0.491 1.59e-06 6.00e-07 SPEPLSQQ 1 16 24 C -2 9 11 1.366 1.281 1.76e-08 4.60e-09 SPEPLSQQW 1 17 19 I -1 3 12 0.000 0.000 1.08e-03 6.90e-04 PEP 1 17 20 I -1 4 11 0.000 0.000 7.72e-04 4.83e-04 PEPL 1 17 21 I -1 5 12 0.000 0.000 2.18e-04 1.26e-04 PEPLS 1 17 22 I -1 6 12 0.000 0.000 1.77e-05 8.63e-06 PEPLSQ 1 17 23 I -1 7 11 0.576 0.182 3.06e-06 1.27e-06 PEPLSQQ 1 17 24 C -2 8 11 0.976 0.588 2.40e-08 6.87e-09 PEPLSQQW 1 18 20 I -1 3 11 0.000 0.000 1.38e-03 8.96e-04 EPL 1 18 21 I -1 4 12 0.000 0.000 3.90e-04 2.33e-04 EPLS 1 18 22 I -1 5 11 0.000 0.000 3.16e-05 1.60e-05 EPLSQ 1 18 23 I -1 6 11 0.000 0.000 2.56e-06 1.10e-06 EPLSQQ 1 18 24 C -2 7 11 0.678 0.182 2.12e-08 6.31e-09 EPLSQQW 1 19 21 I 0 3 12 0.000 0.000 1.39e-02 1.05e-02 PLS 1 19 22 I 0 4 12 0.000 0.000 1.13e-03 7.24e-04 PLSQ 1 19 23 I 0 5 11 0.000 0.000 9.15e-05 4.97e-05 PLSQQ 1 19 24 C -1 6 11 0.000 0.000 3.21e-07 1.21e-07 PLSQQW 1 20 22 I 0 3 11 0.000 0.000 2.02e-03 1.34e-03 LSQ 1 20 23 I 0 4 11 0.000 0.000 1.63e-04 9.23e-05 LSQQ 1 20 24 C -1 5 10 0.000 0.000 5.73e-07 2.24e-07 LSQQW 1 21 23 I 0 3 12 0.000 0.000 2.28e-04 1.32e-04 SQQ 1 21 24 C -1 4 11 0.000 0.000 8.02e-07 3.20e-07 SQQW 1 22 24 C -1 3 10 0.000 0.000 2.84e-06 1.23e-06 QQW